Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKVYVEGMEFYGYHGVFTEENKLGQRFKVDLTAELDLSKAGQTDDLEQTINYAELYHVCKDIVEGEPVKLVETLAERIAGTVLGKFQPVQQCTVKVIKPDPPIPGHYKSVAIEITRKKS
1RSD Chain:A ((3-120))
-DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVREN-
General information:
TITO was launched using:
RESULT:
Template:
1RSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60207 for 838 contacts (-71.8/contact) +
2D Compatibility (PS) -12774 + (NN) -7640 + (LL) 180
1D Compatibility (HY) -12800 + (ID) 2800
Total energy: -96041.0 ( -114.61 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1RSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RSD-query.scw
PDB file :
Tito_Scwrl_1RSD.pdb
: