Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
2HW8 Chain:A ((2-228))
--KHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKMGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
2HW8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110726 for 1804 contacts (-61.4/contact) +
2D Compatibility (PS) -24920 + (NN) -16044 + (LL) 660
1D Compatibility (HY) -17600 + (ID) 6150
Total energy: -174780.0 ( -96.88 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_2HW8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HW8-query.scw
PDB file :
Tito_Scwrl_2HW8.pdb
: