Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEHYYSEKPSVKSNKQTWSFRLRNKDFTFTSDSGVFSKKEVDFGSRLLIDSFEEPEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQN---GITNVKIYQSDLFSNVDSAQTFASILTNPPIRAGKKVVHAI----FEKSAEHLKASGELWIVIQKKQGAPSAIEKLEELFDEVSVVQKKKGYYIIKAKKV
4DCM Chain:A ((174-368))
--------EPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR-FNAVLCNPPF-------DNVAWEMFHHARRCLKINGELYIVANRHL---DYFHKLKKIFGNCTTIATNNKFVVLKAVKL
General information:
TITO was launched using:
RESULT:
Template:
4DCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67068 for 1485 contacts (-45.2/contact) +
2D Compatibility (PS) -19939 + (NN) -7333 + (LL) 916
1D Compatibility (HY) -18800 + (ID) 2700
Total energy: -114924.0 ( -77.39 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4DCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCM-query.scw
PDB file :
Tito_Scwrl_4DCM.pdb
: