Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIYGIYMDRPLSQEETDRLMSFVSAEKREKCRRFYHKEDAHRTLLGDVLVRSVISEQYQLNKADIRFSAQEYGKPCIPDLPNAHFNISHSGHWVIGAFDSDPIGVDIEKMKPISLGIAERFFSKNEYSDLLSKHKDEQNDYFYHLWSMKESFIKQEGKGLSLPLDSFSVRLHEDGRVSVELPEHHTPCFIKTYEVDPGYKMAVCAARPDFPEDITMISYEALL
4MRT Chain:A ((1-224))
MKIYGIYMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQYQLDKSDIRFSTQEYGKPCIPDLPDAHFNISHSGRWVIGAFDSQPIGIDIEKTKPISLEIAKRFFSKTEYSDLLAKDKDEQTDYFYHLWSMKESFIKQEGKGLSLPLDSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAVCAAHPDFPEDITMVSYEELL
General information:
TITO was launched using:
RESULT:
Template:
4MRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137294 for 1746 contacts (-78.6/contact) +
2D Compatibility (PS) -24450 + (NN) -11167 + (LL) 0
1D Compatibility (HY) -31200 + (ID) 9650
Total energy: -213761.0 ( -122.43 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4MRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MRT-query.scw
PDB file :
Tito_Scwrl_4MRT.pdb
: