Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGIVVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSGTPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLINIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLTIIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG
4RV7 Chain:B ((19-176))
---------------------------------------------------------------------------------------------------SYGSRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVT----------------
General information:
TITO was launched using:
RESULT:
Template:
4RV7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121453 for 1256 contacts (-96.7/contact) +
2D Compatibility (PS) -17169 + (NN) -7365 + (LL) 10932
1D Compatibility (HY) -18000 + (ID) 5400
Total energy: -158455.0 ( -126.16 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_4RV7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV7-query.scw
PDB file :
Tito_Scwrl_4RV7.pdb
: