Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNFTE-KLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
3LSG Chain:A ((5-103))
-----------------------------------------------------------------------------------------------------ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYRE------------
General information:
TITO was launched using:
RESULT:
Template:
3LSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61757 for 656 contacts (-94.1/contact) +
2D Compatibility (PS) -10353 + (NN) -2672 + (LL) 5688
1D Compatibility (HY) -7200 + (ID) 1700
Total energy: -77994.0 ( -118.89 by residue)
QMean score : 0.731
(partial model without unconserved sides chains):
PDB file :
Tito_3LSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LSG-query.scw
PDB file :
Tito_Scwrl_3LSG.pdb
: