Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK-DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDASEAAEELSCLLKS-------------------------------HAEDTRMAAAISLMRIGKP-SLPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
4XL5 Chain:C ((46-229))
------AVEPLIKALKDEDASVRYAAATALGQIGDERAVEPLIKALKDEDGYVRTAAAEALGQIGDER--AVEPLIKALKDEDPWVRLTAARALGEIGDERAVEPLIKALKDEDPWVRLTAARALGQIGDERAVEPLIKALKDEDASVRKAAAVALGQIGDE----RAVEPLIKALKDEDEYVRQRAA-SALGKIGG--------
General information:
TITO was launched using:
RESULT:
Template:
4XL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97807 for 1131 contacts (-86.5/contact) +
2D Compatibility (PS) -15811 + (NN) -8727 + (LL) 684
1D Compatibility (HY) -2000 + (ID) 1950
Total energy: -125611.0 ( -111.06 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4XL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XL5-query.scw
PDB file :
Tito_Scwrl_4XL5.pdb
: