Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMVKVGLVDDYRVDLEKLEAIVSRM-Q--DVEI-VFSTDSAKEAYRRVK-NGDIDLLLADIEM--PHMSGYELADLIKSHSLDVDVIFVTGHGGY--AVHAFDLNVHDYIMKPYYADRLAASFDRYLKKKTE-----TSLNGRILIKQKSEMHVLQKKDIIFAERTGR--STTIVTTAEEVQTYQTLNDIKGDLPEKD-FLRSHRSFIINIHYIKHFSAYTKHSFTVSFEGTSKKAMITKQQLDYFQNYYF
4CBV Chain:A ((2-244))--KVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENDEVNQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSMLLENEDVVDYFDYNYKGNDLKIPYHDILYIETTGVSHKLRIIGKNFAKEFYGTMTDIQEKDKHTQRFYSPHKSFLVNIGNIREIDRKN-L--EIVFYEDH-RCPISRLKIRKLKDIL-


General information:
TITO was launched using:
RESULT:

Template: 4CBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1042 -133743 -128.35 -591.78
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : -128.35
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_4CBV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4CBV-query.scw
PDB file : Tito_Scwrl_4CBV.pdb: