Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYKILLADDERIILDGMAGIIEWESLGASLIGKAQNGHEAYEKIVHKQPHIVITDVKMPGMDGLELIKKVSAVSPSVQFIVLSGFGEFEYAKEAMKYGVKHYLLKPCNEQQIISSLEEIIAELKRQDVHKKKTAHLKHELDHIRSFAADQYLEGLIAGVAQLSPPPSLAGKKIRLLILKGEQSIDAAAREALGSALTAVC--SSGEWTVLAVEENAAEKVAEVF------ADRKMAISQAGELRHA--GQLFRDTAEASGDLHGSAVISKMIRLIADEL---GNPNLSLKWAAKDMLFMNPDYLGKLFKQETGEKFSQYVTRVRL----------------EHAMKQMKIRR-------DVSVSEIAEEIGFGDNPKYFSLVFKKYTGLTPSEFRRKQGGASAG
1NY5 Chain:A ((1-384))-MNVLVIEDDKVFRGLLEEYLSMKGI---KVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVF--ESPKMKEILEKIKKISCAECP-------VLITGESGVG---KEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS----LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV


General information:
TITO was launched using:
RESULT:

Template: 1NY5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1456 -183628 -126.12 -527.67
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -126.12
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.432

(partial model without unconserved sides chains):
PDB file : Tito_1NY5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NY5-query.scw
PDB file : Tito_Scwrl_1NY5.pdb: