Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVITMLADDDSVSTVT-FGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFLAAPVLGRPDAAAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDVGEESKTANAAKISINFLLVSMLEALSESFLMMEKYGLEQKQFLEIAS-ALFGSPVYQNYGTIMAEQKFEPAGFKMSLGLKDTNLALAAAKRVSANLPLAELAKSHFESGIEKGFGDLDWAALIKCIK
4GBJ Chain:A ((6-290))EKIAFLGLGNLGTPIAEILLEAGYELVVW-------EPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSME---LVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGAS


General information:
TITO was launched using:
RESULT:

Template: 4GBJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1482 -189982 -128.19 -688.34
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.83

3D Compatibility (PKB) : -128.19
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.595

(partial model without unconserved sides chains):
PDB file : Tito_4GBJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4GBJ-query.scw
PDB file : Tito_Scwrl_4GBJ.pdb: