Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-MKKAYLTVCSNQQIADRVFQMVLKGELVQGFTTPGQFLHLKVSEAVTPLLRRPISIADVNFEKNEVTIIYRVDGE--GTRLLSLKQQGELVDVLGPLGNGFPVNEVQPGKTALLVGGGVGVPPLQELSKRLIEKGVNVIHVLGFQSAKDVFYEEECRQYG--DTYVATADGSYGETGFVTDVIKRKKLEFDILLSCGPTPMLKALKQEYAHKE-VYLSMEERMGCGIGACFACVCHTNESETSYVKVCLDGPVFKAQEVAL
1EP3 Chain:B ((2-262))SQLQEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNG-AMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTGCQMTILLGFASENVKILENEFSNLKNVTLKIATDDGSYGTKGHVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISMESRMACGIGACYACVEHDKEDESHALKVCEDGPVFLGKQLSL


General information:
TITO was launched using:
RESULT:

Template: 1EP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1496 -164863 -110.20 -646.52
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain B : 0.83

3D Compatibility (PKB) : -110.20
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.513

(partial model without unconserved sides chains):
PDB file : Tito_1EP3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1EP3-query.scw
PDB file : Tito_Scwrl_1EP3.pdb: