Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEQVETRLTPRERLTRGLAYSAVGPVDVTRGLLELGVGLGLQSARSTAAGLRRRYREGRLAREVAAAQETLAQEL--TAAQDVVANLPQALQDARTQRRSKHHLWIFAGIAA---AILAGGAVAFSIVRRSSRPEPSPRPPSVEVQPRS
1QGT Chain:A ((1-142))
MDIDPYKEFGATVELLSFLPSDFFPS---VRDLLDTASALYREALESPEHC-SPHHTALRQAILCWGELMTLATWVGNNLEDPASRDLVVNYVNTNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPILST----
General information:
TITO was launched using:
RESULT:
Template:
1QGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10572 for 898 contacts (-11.8/contact) +
2D Compatibility (PS) -14771 + (NN) -11501 + (LL) 536
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -41758.0 ( -46.50 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1QGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QGT-query.scw
PDB file :
Tito_Scwrl_1QGT.pdb
: