Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSKVRKKNDFTVSAVSRTPMKVKVGPSSVWFVSLFIGLMLIGLIWLMVFQLAAIGSQAPTALNWMAQLGPWNYAIAFAFMITGLLLTMRWH--
2MMU Chain:A ((30-95))
-----------------------------SVWFVSLFIGLMLIGLIWLMVFQL----------------LGPWNYAIAFAFMITGLLLTMRWHLE
General information:
TITO was launched using:
RESULT:
Template:
2MMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35700 for 242 contacts (-147.5/contact) +
2D Compatibility (PS) -4802 + (NN) -866 + (LL) 2816
1D Compatibility (HY) -12800 + (ID) 2400
Total energy: -53752.0 ( -222.12 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2MMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MMU-query.scw
PDB file :
Tito_Scwrl_2MMU.pdb
: