Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTAAAADGTMTVTLEDVLSNTDGQVIAVYRLRASRAGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
1TUH Chain:A ((29-155))
---EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHVLKSDDGRVIGIHRNTAERGGKRLDVGCCIVFEFKNGRVIDGREHFYDLYAWDEFW-
General information:
TITO was launched using:
RESULT:
Template:
1TUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84216 for 924 contacts (-91.1/contact) +
2D Compatibility (PS) -14046 + (NN) -4372 + (LL) 328
1D Compatibility (HY) -4800 + (ID) 2100
Total energy: -109206.0 ( -118.19 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1TUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TUH-query.scw
PDB file :
Tito_Scwrl_1TUH.pdb
: