Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
4YIF Chain:A ((7-131))
-----------------------------------------------------RLASDLSLAVMRLSRQLRFRNPSSP----VSLSQLSALTTLANEGAMTPGALAIRERVRPPSMTRVIASLADMGFVDRAPHPIDGRQVLVSVSESGAELVKAARRARQEWLAERLATLNRSERDILRSA--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4YIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41948 for 805 contacts (-52.1/contact) +
2D Compatibility (PS) -13946 + (NN) -11040 + (LL) 4416
1D Compatibility (HY) -6400 + (ID) 2300
Total energy: -71218.0 ( -88.47 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4YIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YIF-query.scw
PDB file :
Tito_Scwrl_4YIF.pdb
: