Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY-DAERFGARLVASP---------------------QHADALLVTGVVTHNMA-------------------GPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVV------PVDVEIAGCPPTPAAIMAALRSVTGK
4KN9 Chain:S ((5-180))
-------------------------------AKKAPVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRYCIVGETLDAKGHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHPDWMVGTLVAAWS-
General information:
TITO was launched using:
RESULT:
Template:
4KN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78680 for 1038 contacts (-75.8/contact) +
2D Compatibility (PS) -13592 + (NN) -4362 + (LL) 2368
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -101616.0 ( -97.90 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4KN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KN9-query.scw
PDB file :
Tito_Scwrl_4KN9.pdb
: