Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSARCQITGRTVGFGKAVSHSHRRTRRRWPPNIQLKAYYLPSEDRRIKVRVSAQGIKVIDRDGHRGRRRAARAGSAPAHFARQAGSSLRTAAIL
5GAH Chain:Y ((2-63))
-SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDKKG-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5GAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4731 for 327 contacts (-14.5/contact) +
2D Compatibility (PS) -6644 + (NN) -1695 + (LL) 2412
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -15508.0 ( -47.43 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_5GAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAH-query.scw
PDB file :
Tito_Scwrl_5GAH.pdb
: