Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGPVGHQCAECVREGARAVRQPRTPFGGRQRSATPVVTYTLISLNALVFVMQVTVMGLERQLAL-WP-PAVASGQTYRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSA-LGGSVLVYLIAPLNTATAGASGAVFGLFGATFMVARR-----LHLDVRWVVALIVINLA--FTFLAPAISWQGHVGGLVTGALVAATYVYAPRERRNLIQATVTITVLVAFVVLIGWRTVDLLALFGGRLNLS
5F5G Chain:A ((92-272))
----------------------------------RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW---FGGLSGVVFALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNA-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5F5G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142041 for 1347 contacts (-105.4/contact) +
2D Compatibility (PS) -17206 + (NN) -3658 + (LL) 6000
1D Compatibility (HY) -14800 + (ID) 2150
Total energy: -173855.0 ( -129.07 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_5F5G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5F5G-query.scw
PDB file :
Tito_Scwrl_5F5G.pdb
: