Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAERAGHQWCLFLDRDGVINRQVVGDYVRNWRQFEWLPGAARALKKLRAWAPYIVVVTNQQGVGAGLMSAVDVMVIHRHLQMQLASDGVLIDGFQVCPHHRS-------QRCGCRKPRPGLVL---DWLGRHPDSEPLLSIVVGDSLSDLELAHNVAAAAGACASVQIG---GASSGGVADASFDSLWEFAVAVGHARGERG
2GMW Chain:B ((28-203))
-----------IFLDRDGTIN--VDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL--HIDMA--ASYMVGDKLEDMQAA--VAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI--------
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128426 for 1324 contacts (-97.0/contact) +
2D Compatibility (PS) -17792 + (NN) -9926 + (LL) 1220
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -171324.0 ( -129.40 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: