Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNSRRRSLRWSWLLSVLAAVGLGLATAPAQAAPPALSQDRFADFPALPLDPSAMVAQVGPQVVNINTKL--GYNNAVGAGTGIVIDPN-GVVLTNNHVIAGATDINAFSVGSGQTYGVDVVGYDRTQDVAVLQLRGAGGLPSAAIGGGVA--VGEPVVAMGNSGGQGGTPRAVPGRVVALGQTVQASDSLTGAEETLNGLIQFDAAIQPGDSGGPVVNGLGQVVGMNTAASDNFQLSQGGQGFAIPIGQAMAIAGQIRSGG-------GSPTVHIGPTAFLGLGVVDNNGNGARVQRVVGSAPAASLGISTGDVITAVDGAPINSATAMADALNGHHPGDVISVTWQTKSGGTRTGNVTLAEGPPA----------------------------------------------------------------------------------------------- |
| 3PV2 Chain:A ((6-439)) | ------------------------------------------------MPSMAPVLKNIMPAIVNVAVQGYLPNRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVT-LQDGRRLKARLIGGDSETDLAVLKID-AKNLKSLVIGDSDKLEVGDFVVAIGNPFGLS--QSATFGIVSAL-----------------KNFIQTDAAINPGNSGGALVNAKGELIGINTAILV-------GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGY-PEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERD-NKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -141387 for 2262 contacts (-62.5/contact) +
2D Compatibility (PS) -30613 + (NN) -16472 + (LL) 4576
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -204496.0 ( -90.40 by residue)
QMean score : 0.438
|
|
|