Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFATIVRHQHLAGGGVEVARG--AAGIGGAALWDPPDRWRESRR-QQLAMT-PGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCP-AYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
4FD4 Chain:A ((6-189))
-SIVLRVARLDELEQVREILHRIYYPEEGITISYVHGKSHTLDDERFSLSF-----VEQGTVVVAEDSAAKKFIGVSIAGPIQPGDPDAMVEEAATTETKKWGDILKLLALLERTADVC-GRYGLEKAYHVHILAVDPTYRGHSLGQRLLQFQMDLSKKLGFKAISGDFTSVFSVKLAEKLGMECISQLAL---------------
General information:
TITO was launched using:
RESULT:
Template:
4FD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50783 for 1345 contacts (-37.8/contact) +
2D Compatibility (PS) -18647 + (NN) -2442 + (LL) 1396
1D Compatibility (HY) -6400 + (ID) 1700
Total energy: -78576.0 ( -58.42 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_4FD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FD4-query.scw
PDB file :
Tito_Scwrl_4FD4.pdb
: