Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVAAGALVVETDSFRLRLLDGLVASIGERGYRATTVSDIVRHARTSKRTFYDRFTSKEQCFLELLLADNETLGNSIRAAVDPNADWHDQIRQAVEAYVTHIESRPAVTLSWIREFPS--LGAA---AYPVQRRGMEQLTSLLIELSASPGFRRANLPPLNVPLAVILLGGLRELTALTVEDG--QPIRNIVEPAVDASIALLGPRS
4W97 Chain:A ((5-197))
---------AGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRP-DLD--VDLVYRFIRDTT-WVSVRWYRPGGPLTAQQVGQQYLAIVLGGITK--
General information:
TITO was launched using:
RESULT:
Template:
4W97.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85908 for 1332 contacts (-64.5/contact) +
2D Compatibility (PS) -19564 + (NN) -5949 + (LL) 1384
1D Compatibility (HY) -3200 + (ID) 1950
Total energy: -115187.0 ( -86.48 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4W97.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W97-query.scw
PDB file :
Tito_Scwrl_4W97.pdb
: