Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2O5U Chain:A ((1-140))
MATAPRP---LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREA--CAAGRFVHVFVERRSSRPVAIPQELRDALA------
General information:
TITO was launched using:
RESULT:
Template:
2O5U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105982 for 1034 contacts (-102.5/contact) +
2D Compatibility (PS) -15360 + (NN) -11051 + (LL) 984
1D Compatibility (HY) -14400 + (ID) 3150
Total energy: -148959.0 ( -144.06 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2O5U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O5U-query.scw
PDB file :
Tito_Scwrl_2O5U.pdb
: