Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTVVVEKTPTTLPQATPNGAAPWHVRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGIRVVRRDGSAIGPWRLLVRDLAHLVDTLSLFVGWLWPLWDSRRRTFADLLLRTEVRRVEPVQRPAVIRRLTAAVALAAAGACASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRD--FERARSLATDRYRPQLSIQQDSVRESG---PVR-NQYWVTDSAVLSATPAQATMLLFMQGE-R---GTP---PNQRYIQSTVRAIFQKSRGQWRLDDLAVVMKPRQPTGEK |
| 5D9R Chain:A ((677-799)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTAENIVSKWQKIKSLAFGPDHRIEMLPEVLDGRMLKIWTDRAAETAQLGLVYDYTLLKLSVDSVTVSA-DGTRALVEATLEESACLSDLVHPENNATDVRTYTTRYEVFWSKSGWKITEGSVL---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5D9R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31976 for 716 contacts (-44.7/contact) +
2D Compatibility (PS) -11343 + (NN) 4206 + (LL) 17660
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -25303.0 ( -35.34 by residue)
QMean score : 0.177
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