Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLAG---GPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGIL-AESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
3DUW Chain:A ((10-222))
-----------VDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK
General information:
TITO was launched using:
RESULT:
Template:
3DUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145332 for 1749 contacts (-83.1/contact) +
2D Compatibility (PS) -23294 + (NN) -14460 + (LL) -168
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -208554.0 ( -119.24 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3DUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUW-query.scw
PDB file :
Tito_Scwrl_3DUW.pdb
: