Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPVNVISVAVVASDPLTRDGALARLSSHRELDVRA-WQ--------A-GCETSVLLVLATTITAP-LLCQIEDVQKDGPSHAPKLVVVADEFSAEQVFRMIKLGLTGLLYRSQSTFDCIVETIRLSAEGRLRLPERVQRYLVGRIKSTPTAEPDTPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGLI
4GVP Chain:A ((3-208))
------IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLL-MEDMDGVEATTQIKKDL--PQIKVLMLTSFIEDKEVYRALDAGVDSYILK-TTSAKDIADAVRKTSRGESVFEPEVL-VKMRNR-----MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI
General information:
TITO was launched using:
RESULT:
Template:
4GVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185411 for 1514 contacts (-122.5/contact) +
2D Compatibility (PS) -20800 + (NN) -5038 + (LL) 472
1D Compatibility (HY) -14000 + (ID) 2100
Total energy: -226877.0 ( -149.85 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4GVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GVP-query.scw
PDB file :
Tito_Scwrl_4GVP.pdb
: