Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQGPRERMVVSAALLIRERGAHATAISDVLQHSGAPRGSAYHYFPGGRTQLLCEAVDYAGEHVAAMINEAE----GGLELLDALIDKYRQQLLSTDFRAGCPIAAVSVEAGDEQDRERMAPVIARAAAVFDRWSDLTAQRFIADGIPPDRAHELAVLATSTLEGAILLARVRRDLTPLDLVHRQLRNLLLAELPERSR
1SGM Chain:A ((5-188))
-GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALIS-----EPLRTVCMKVFKSWEAVFARKLMENGFAEEEANQLGTLINSMIEGGIMLSLTNKDKTPLLLIAEQIPVLVR--------
General information:
TITO was launched using:
RESULT:
Template:
1SGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88931 for 1397 contacts (-63.7/contact) +
2D Compatibility (PS) -19925 + (NN) -13563 + (LL) 1204
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -136015.0 ( -97.36 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1SGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SGM-query.scw
PDB file :
Tito_Scwrl_1SGM.pdb
: