Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNLALWSRPVWDVEPWDRWLRDFFGPAATTDW------YRP-----VAGDFTPAAEIVKDGDDAVVRLELPGIDVDKDVNVELDPGQPVSRLVIRGEHRDEHTQDAGDKDGRTLREIRYGSFRRSFRLPAHVTSEAIAASYDAGVLTVRVAGAYKAPAETQAQRIAITK
3W1Z Chain:A ((10-139))
--------------------------PPTVNDLFSDFVSYSPRLNNQIPGELSPSIDVHEGKDTVSVDVELPGVK-KEDVQVHYDSG----KLTISGEVVNERKNESTEGNQR-WSERRFGSFSRTITIPAKIDADRIEANFSNGLLTVTLPKVEKSQTKKQ--------
General information:
TITO was launched using:
RESULT:
Template:
3W1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45155 for 682 contacts (-66.2/contact) +
2D Compatibility (PS) -12829 + (NN) -9535 + (LL) 3108
1D Compatibility (HY) -8400 + (ID) 1950
Total energy: -74761.0 ( -109.62 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_3W1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W1Z-query.scw
PDB file :
Tito_Scwrl_3W1Z.pdb
: