Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAADVVYVAPGRPAAGSDPDWDARVALHRARRPPTWLTVE---------TADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDG----LCAALTGLPTAIV-VTNEVGLGVVPSHSSGVLFRDLLGTINRRVAAVCDEVHLVIAGRVLKL
1C9K Chain:A ((2-179))
--ILVTGGARSGKSRHAEALIGDAPQVLYIATSQI---------ARIQHHKDGRPAHWRTAECWRHLDTLITADLAP-----DDAILLECITTMVTNLLFAL----DPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGIGVKI
General information:
TITO was launched using:
RESULT:
Template:
1C9K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81481 for 1055 contacts (-77.2/contact) +
2D Compatibility (PS) -17120 + (NN) -7933 + (LL) 1172
1D Compatibility (HY) -13200 + (ID) 3550
Total energy: -122112.0 ( -115.75 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1C9K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C9K-query.scw
PDB file :
Tito_Scwrl_1C9K.pdb
: