Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAISGQICRCTGYTTIVRSIQWAAAHQTVKAQS
1N5W Chain:D ((5-154))
-HIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAA--------
General information:
TITO was launched using:
RESULT:
Template:
1N5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143523 for 1230 contacts (-116.7/contact) +
2D Compatibility (PS) -16417 + (NN) -5749 + (LL) 916
1D Compatibility (HY) -17600 + (ID) 4450
Total energy: -186823.0 ( -151.89 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1N5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5W-query.scw
PDB file :
Tito_Scwrl_1N5W.pdb
: