Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTVGSMNERVPDSSGLPLRAMVMVLLFLGVVFLLLVWQALGSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
2M5Y Chain:A ((1-122))
------------------------------------------GSSPNSEDDSSAISTMTTTTAAPTSTSVKPAAPRAEVRVYNISGTEGAAARTADRLKAAGFTVTDVGNLSLPDVAATTVYYTEVEGERATADAVGRTLGAAVELRLPELSDQPPGVIVVVTG
General information:
TITO was launched using:
RESULT:
Template:
2M5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41564 for 785 contacts (-52.9/contact) +
2D Compatibility (PS) -13464 + (NN) -8089 + (LL) 4276
1D Compatibility (HY) -11600 + (ID) 6100
Total energy: -76541.0 ( -97.50 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2M5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M5Y-query.scw
PDB file :
Tito_Scwrl_2M5Y.pdb
: