Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLMRTWIPLVILVVVIVGGFTVHRIRGFFGSENRPSYSDTNLENSKPFNPKHLTYEIFGPPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKSA
2LW3 Chain:A ((51-140))
--------------------------------------------------MHLTYEIFGPPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKSA
General information:
TITO was launched using:
RESULT:
Template:
2LW3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29813 for 505 contacts (-59.0/contact) +
2D Compatibility (PS) -9641 + (NN) -2688 + (LL) 2980
1D Compatibility (HY) -12400 + (ID) 4450
Total energy: -56012.0 ( -110.91 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_2LW3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LW3-query.scw
PDB file :
Tito_Scwrl_2LW3.pdb
: