Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMTLKVAIGPQNAFVLRQGIRREYVLVIVALCGIADGALIAAGVGGFAALIHAHPNMTLVARFGGAAFLIGYALL--AARNAWRPSGLVPSESGPAALIGVVQMCLVVTFLNPHVYLDTVVLIGALANEESDLRWFFGAGAWAASVVWFAVLGFSAGRLQPFFATPAAWRILDALVAVTMIGVAVVVLVTSPSVPTANVALII
2FEF Chain:A ((108-173))
-----------------------------------------------------------------AALWLDYSRLLGAARDSLREQG----ETAPALAPRTGQYPFALQLLAMGVLLDAQELIPALVEE--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2FEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32970 for 297 contacts (-111.0/contact) +
2D Compatibility (PS) -6027 + (NN) -2522 + (LL) 12620
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -33199.0 ( -111.78 by residue)
QMean score : 0.076
(partial model without unconserved sides chains):
PDB file :
Tito_2FEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEF-query.scw
PDB file :
Tito_Scwrl_2FEF.pdb
: