Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSSNGRGGAGGVGGSSEHPQYPKVVLVTGACRFLGGYLTARLAQNPLINRVIAVDAIAPSK--DMLR--RMGRAEFVRADIRNP-FIAKVIRNGEVDTVVHAAAASYAP-RSGGSAALKELNVMGAMQLFAACQKAPSVRRVVLKSTSEVYGSSPHDP----------VMFTEDSSSRRPFSQGFPKDSLDIEGYVRALGRRRPDIAVTILRLANMIGPAMDT--TLSRYL----AGPLVPTIFGRDARLQLLHEQDALGALERAAMAG-KAGTFNIGADGILMLSQAIRRAGRIP-VPVPGFGVWALDSLRRANHYTELNREQFAYLSYGRVMDTTRMRVELGYQPKW-TTVEAFDDYFRGRGLTPIIDPHRVRSWEGRAVGLAQRWGSRNPIPWSGLR |
| 1OC2 Chain:A ((3-329)) | ---------------------QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLA--AKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY--NPSSPYSSTKAASDLIVKAWVRS-FGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYD--------------HVTD--RAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDWW------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177741 for 2633 contacts (-67.5/contact) +
2D Compatibility (PS) -32350 + (NN) -12338 + (LL) 2336
1D Compatibility (HY) -4000 + (ID) 3350
Total energy: -227443.0 ( -86.38 by residue)
QMean score : 0.399
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