Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA
2KVC Chain:A ((1-103))
GSHMNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVERVRARLAAQGWPLDDVRDREEHA
General information:
TITO was launched using:
RESULT:
Template:
2KVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67231 for 687 contacts (-97.9/contact) +
2D Compatibility (PS) -10954 + (NN) -12452 + (LL) 0
1D Compatibility (HY) -14000 + (ID) 5000
Total energy: -109637.0 ( -159.59 by residue)
QMean score : 0.710
(partial model without unconserved sides chains):
PDB file :
Tito_2KVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KVC-query.scw
PDB file :
Tito_Scwrl_2KVC.pdb
: