Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVAISGAGVAGAALAHWLQRTG-HTPTVIERAPKFRTGGYMIDFWGVGYQVAKRMGITDQIAAAGYHMEHVRSVGPTGKV--KADLGVDVFRRMVGDDFT--SLPRGDLAAAIYTTIEDQVETIFDDSIATID--EHRDGVRLTFERTA---PRDF--DLVIGADGLHSNVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERSYVLYNTVDRQ-------LARFALRGDRTMFLFVFR------AEHDNPGVAPKD-ELRDQFG-----DVGW-ESRDILAALDDVEDLYFDVVSQIRMDRWSRGRVLLIGDAAGCISLLGGEGTGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIEGKQASAAKFIWFFATRTRFG-LWFRNVAMRTMNFGPLATLFAGSVRDDFELPDYTW |
| 2RGJ Chain:A ((5-379)) | IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEA-----GNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHG-GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEG-KSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLI--LQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR-NADVAAALREYEEARRP-------TANKII--LANREREKEEWAAASRP--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178451 for 2771 contacts (-64.4/contact) +
2D Compatibility (PS) -37286 + (NN) -14055 + (LL) 3248
1D Compatibility (HY) -14800 + (ID) 4850
Total energy: -246194.0 ( -88.85 by residue)
QMean score : 0.419
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