Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTFDGDTSAGEAVDLTEANAFQDAAAPAEEVDPAAALKAELRSKPGDWYVVHSYAGYENKVKANLETRVQNLDVGDYIFQVEVPTEEVTEIKNGQRKQVNRKVLPGYILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPRGSTRKAAKGAASTAAAAEAGGLERPV-VEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETPVELTFGQVSKI
2LQ8 Chain:A ((7-176))
------------------------------------------------WYIVLTMSGYEEKVKENIEKKVEATGIKNLVGRIVIP------IRGGQRRK-SEKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQP--VPVKD------------REMRPILRLAGLEEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI
General information:
TITO was launched using:
RESULT:
Template:
2LQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83282 for 1222 contacts (-68.2/contact) +
2D Compatibility (PS) -18596 + (NN) -8346 + (LL) 4420
1D Compatibility (HY) -19200 + (ID) 3250
Total energy: -128254.0 ( -104.95 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_2LQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LQ8-query.scw
PDB file :
Tito_Scwrl_2LQ8.pdb
: