Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRGELWFAAT-P------GGDRPVLVLTRDPVADRIGAVVVVALTRTRR--GLVSELELTAVENRVPSDCVVNFDNIHTLPRTAFRRRITRLSPARLHEACQTLRASTGC
4MDX Chain:A ((4-114))
VKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISLAL
General information:
TITO was launched using:
RESULT:
Template:
4MDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65849 for 732 contacts (-90.0/contact) +
2D Compatibility (PS) -10971 + (NN) -2988 + (LL) 0
1D Compatibility (HY) -7200 + (ID) 1400
Total energy: -88408.0 ( -120.78 by residue)
QMean score : 0.709
(partial model without unconserved sides chains):
PDB file :
Tito_4MDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MDX-query.scw
PDB file :
Tito_Scwrl_4MDX.pdb
: