Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALGK
2CDN Chain:A ((21-201))
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALGK
General information:
TITO was launched using:
RESULT:
Template:
2CDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68642 for 1417 contacts (-48.4/contact) +
2D Compatibility (PS) -20565 + (NN) -18802 + (LL) 0
1D Compatibility (HY) -23200 + (ID) 9050
Total energy: -140259.0 ( -98.98 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_2CDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDN-query.scw
PDB file :
Tito_Scwrl_2CDN.pdb
: