Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDSKVAIVTGAAQGIGQAYAQALAREGASVVVADINADGAAAVAKQIVADGGTAIHVPVDVSDEDSAKAMVDRAVGAFGGIDYLVNNAAIYGGMKLDLLLTVPLDYYKKFMSVNHDGVLVCTRAVYKHMAKRGGGAIVNQSSTAAWLYSNFYGLAKVGVNGLTQQLARELGGMKIRINAIAPGPIDTEATRTVTPAELVKNMVQTIPLSRMGTPEDLVGMCLFLLSDSASWITGQIFNVDGGQIIRS
3QIV Chain:A ((3-241))
-FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSS-----------LAKVGINGLTQQLSRELGGRNIRINAIAP-------------------------------PDDLVGMCLFLLSDEASWITGQIFNV--------
General information:
TITO was launched using:
RESULT:
Template:
3QIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161686 for 1703 contacts (-94.9/contact) +
2D Compatibility (PS) -21327 + (NN) -8354 + (LL) 3092
1D Compatibility (HY) -25600 + (ID) 8000
Total energy: -221875.0 ( -130.28 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3QIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QIV-query.scw
PDB file :
Tito_Scwrl_3QIV.pdb
: