Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTGVTRQKILITGASSGLGAGMARSFAAQGRDLALCARRTDRLTELKAELSQRYPDIKIAVAELDVNDHERVPKVFAELSDEIGGIDRVIVNAGIGKGARLGSGKLWANKATIETNLVAALVQIETALDMFNQRGSGHLVLISSVLGVKGVPGVKAAYAASKAGVRSLGESLRAEYAQRPIRVTVLEPGYIESEMTAKSASTMLMVDNATGVKALVAAIEREPGRAAVPWWPWAPLVRLMWVLPPRLTRRFA
2JAP Chain:A ((11-192))
----------LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA--AGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHL-LRSKGTVVQMSSIAGRVNVRNA-AVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119114 for 1505 contacts (-79.1/contact) +
2D Compatibility (PS) -19682 + (NN) -5495 + (LL) 6152
1D Compatibility (HY) -10800 + (ID) 3450
Total energy: -152389.0 ( -101.26 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: