Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAAPTNGAPLSYPSICEGVHWGHLVGGHQPAY
2NLR Chain:A ((45-66))
-DGSAPTNGAPKSYPSVFNGCHY-----------
General information:
TITO was launched using:
RESULT:
Template:
2NLR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1275 for 60 contacts (-21.2/contact) +
2D Compatibility (PS) -2441 + (NN) -3207 + (LL) 364
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -8859.0 ( -147.65 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2NLR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NLR-query.scw
PDB file :
Tito_Scwrl_2NLR.pdb
: