Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
4QVB Chain:B ((4-147))
---QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
General information:
TITO was launched using:
RESULT:
Template:
4QVB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68154 for 1073 contacts (-63.5/contact) +
2D Compatibility (PS) -15988 + (NN) -13614 + (LL) 452
1D Compatibility (HY) -18400 + (ID) 7200
Total energy: -122904.0 ( -114.54 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4QVB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QVB-query.scw
PDB file :
Tito_Scwrl_4QVB.pdb
: