Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISRWLERHVGVQLLRLHDAIYRGTNGRIGHRIPGAPPSLLLHTTGAKTSQPRTTSLTYARDGDAYLIVASKGGDPRSPGWYHNLKANPDVEINVGPKRFGVTAKPVQPHDPDYARLW-QIVNENNANRYTNYQSRTSRPIPVVVLTRR
3R5P Chain:A ((12-116))
--------------------------------------PVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTAR--DATDEERAEYWPQLVTMYPS--YQDYQSWTDRTIPIVVC---
General information:
TITO was launched using:
RESULT:
Template:
3R5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56517 for 746 contacts (-75.8/contact) +
2D Compatibility (PS) -11541 + (NN) -6912 + (LL) 2580
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -83940.0 ( -112.52 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_3R5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5P-query.scw
PDB file :
Tito_Scwrl_3R5P.pdb
: