Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
4YF4 Chain:C ((11-172))
-TVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDVYRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
General information:
TITO was launched using:
RESULT:
Template:
4YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97327 for 1109 contacts (-87.8/contact) +
2D Compatibility (PS) -17360 + (NN) -7268 + (LL) 208
1D Compatibility (HY) -22800 + (ID) 8100
Total energy: -152647.0 ( -137.64 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_4YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YF4-query.scw
PDB file :
Tito_Scwrl_4YF4.pdb
: