Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPTTAA
1YK3 Chain:A ((10-207))
---------ADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYDWPASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPT---
General information:
TITO was launched using:
RESULT:
Template:
1YK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101279 for 1508 contacts (-67.2/contact) +
2D Compatibility (PS) -21016 + (NN) -7608 + (LL) 640
1D Compatibility (HY) -26400 + (ID) 9900
Total energy: -165563.0 ( -109.79 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1YK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YK3-query.scw
PDB file :
Tito_Scwrl_1YK3.pdb
: