Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGFGLRLAEAKARRGPLCLGIDPHPELLRGWDLATTADGLAAFCDICVRAFADF-AVVKPQVAFFESYGAAGFAVLERTIAELRAADVLVLADAKRGDIGATMSAYATAWV-GDSPLAADAVTASPYLGFGSLRPLLEVAAAHGRGVFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVG-AANEAAGPGPGSIGVVVGATAPQAPDL---SAFTGPVLVPGVGVQGGRPEALGGLGG-AASSQLLPAVAREVLRAGPGVPELRAAGERMRDAVAYLAAV
3QW4 Chain:B ((1-260))
TMSFFDLLNER-AKRSLLCVGLDPRAKTAA---------AAVEECKRLIEQTHEYAAAYKPNAAFFEFFGAEGWAALSEVIRAV-PAGIPVVLDAKRGDIADTADAYATSAFKH---LNAHAITASPYMGSDSLQPFMRY---PDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAEGPW-----NVNGNVGLVVGATDPVALARVRARAPTLWFLVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRA----AAKELCEEINAI---
General information:
TITO was launched using:
RESULT:
Template:
3QW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175518 for 2106 contacts (-83.3/contact) +
2D Compatibility (PS) -26609 + (NN) -12712 + (LL) 1896
1D Compatibility (HY) -11200 + (ID) 4450
Total energy: -228593.0 ( -108.54 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3QW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QW4-query.scw
PDB file :
Tito_Scwrl_3QW4.pdb
: