Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPCDVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKYDGSQ-NIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRA-RAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVS-SDIVTDPHSSIFDSGLTKVIDDQAKVVSWYDNEWGYSNRLVDLVTLVGKSL- |
1CER Chain:O ((1-331)) | --MKVGINGFGRIGRQVFRILHSRGV------EVALINDL-TDNKTLAHLLKYDSIYHRFPGEVAYD-DQYLYVDGKAIRATAV-KDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAA-AINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQ-DIVMDPHSSIVDAKLTKALGNMVKVFAWYDNEWGYANRVADLVELVLRKGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167565 for 2874 contacts (-58.3/contact) +
2D Compatibility (PS) -34378 + (NN) -9217 + (LL) 768
1D Compatibility (HY) -32000 + (ID) 9850
Total energy: -252242.0 ( -87.77 by residue)
QMean score : 0.564
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