Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKPNNQTTVVITGASSGIGVELARGLAGRGFPLMLVARRRERLDELADQLRQEHCVGVEVLPLDLADTQARAQLADRLRSDAIAG-LCNSAGFGTSGRFWELPFARESEEVVLNALALMELTHAALPGMVKRGAGAVLNIASIAGFQPIPYMAVYSATKAFVLTFSEAVQEELHGTGVSVTALCPGPVPTE-WAEIASAERFSIPLAQVSPHDVAEAAIAGMLSGKRTVVPGIVPKFVSTSGRFAPRSLLLPAIRIGNRLRGGPSR
4BMV Chain:C ((6-191))
----------TVLITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIW-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121690 for 1488 contacts (-81.8/contact) +
2D Compatibility (PS) -20716 + (NN) -16638 + (LL) 4572
1D Compatibility (HY) -13600 + (ID) 4200
Total energy: -172272.0 ( -115.77 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMV-query.scw
PDB file :
Tito_Scwrl_4BMV.pdb
: