Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGPTTDADAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTPKDT
1S8N Chain:A ((11-200))
----------AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLG-----
General information:
TITO was launched using:
RESULT:
Template:
1S8N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105168 for 1556 contacts (-67.6/contact) +
2D Compatibility (PS) -21301 + (NN) -13370 + (LL) 140
1D Compatibility (HY) -25600 + (ID) 9500
Total energy: -174799.0 ( -112.34 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_1S8N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S8N-query.scw
PDB file :
Tito_Scwrl_1S8N.pdb
: